Python Interpreter: 2.7.5

green: Ok! | red: you have to install it | orange: install only if required

Libraries required for core wrapper

Library Installed Version Hint
BioCASe 3.7.1 A new version of BioCASe is available: 3.8.1 build(1649). Please download and install the latest version.


Libraries only needed for querytool

Library Installed Version Hint
libxml2/libxslt installed You need to install both libxml2, libxslt and their Python bindings for this. On Windows, you do this with a single installer you can find here. On most Linuxes, you can use the package installer, or visit this website.
4Suite XML 1.0.2 4Suite XML

You only need to install either 4Suite XML or libxml2/libxslt + Python bindings. BioCASe will use whichever is installed.
Note that 4Suite XML is not available for Python versions later than 2.5.


Status of additional database dependent drivers

Library Installed Version Download Library
ceODBC not installed ceODBC module
pyodbc not installed pyodbc module
pymssql not installed MS SQL Server module
psycopg2 not installed PostgreSQL module (Linux/Win)
MySQLdb 1.2.5 mySQL module
cx_Oracle not installed Oracle module, you also need the Oracle Client
kinterbasdb not installed Firebird/Interbase module
SQLlite 2.6.0 (integrated into Python)
Sybase not installed Sybase module

If you can't find the Windows installer package for your Python version, try your luck here.
For ODBC, you need to install either ceODBC or pyodbc; BioCASe will use whichever is installed.


Optional external binaries

Binary Status/Version Path
Graphviz Dot 2.30.1 (20180420.1509) /usr/bin/dot
Java openjdk 1.8.0_222 java


Status of writable directories and files

Directory Status Path to problematic file
Configuration Unwriteable /srv/www/html/biocase/config/datasources/biocase_datasources_2020_05_13
Log Writeable None
Archive temp dir Writeable None
Archive download Dir Writeable None